Package index • mSigPlot

Auto-dispatch

Auto-detect catalog type by row count and dispatch to the appropriate plotting function. Start here if you are unsure which function to use.

plot_guess() plot_guess_pdf(): plot_guess, plot_guess_pdf

SBS (single base substitution)

Plot single base substitution spectra and signatures at various resolutions: 12 (simplified), 96 (trinucleotide context), 192 (strand-aware), 288 (3-panel strand-aware), and 1536 (pentanucleotide context).

plot_DBS144() plot_DBS144_pdf() plot_DBS78() plot_DBS78_pdf() plot_ID166() plot_ID166_pdf() plot_ID476() plot_ID476_pdf() plot_ID476_right() plot_ID476_right_pdf() plot_ID83() plot_ID83_pdf() plot_ID89() plot_ID89_pdf() plot_SBS12() plot_SBS12_pdf() plot_SBS192() plot_SBS192_pdf() plot_SBS288() plot_SBS96() plot_SBS96_pdf(): plot_DBS144, plot_DBS144_pdf, plot_DBS78, plot_DBS78_pdf, plot_ID166, plot_ID166_pdf, plot_ID476, plot_ID476_pdf, plot_ID476_right, plot_ID476_right_pdf, plot_ID83, plot_ID83_pdf, plot_ID89, plot_ID89_pdf, plot_SBS12, plot_SBS12_pdf, plot_SBS192, plot_SBS192_pdf, plot_SBS288, plot_SBS96, plot_SBS96_pdf
plot_DBS136() plot_DBS136_pdf() plot_SBS1536() plot_SBS1536_pdf(): plot_DBS136, plot_DBS136_pdf, plot_SBS1536, plot_SBS1536_pdf

DBS (doublet base substitution)

Plot doublet base substitution spectra and signatures: 78-channel bar plots, 136-channel heatmaps, and 144-channel strand-aware bar plots.

plot_DBS144() plot_DBS144_pdf() plot_DBS78() plot_DBS78_pdf() plot_ID166() plot_ID166_pdf() plot_ID476() plot_ID476_pdf() plot_ID476_right() plot_ID476_right_pdf() plot_ID83() plot_ID83_pdf() plot_ID89() plot_ID89_pdf() plot_SBS12() plot_SBS12_pdf() plot_SBS192() plot_SBS192_pdf() plot_SBS288() plot_SBS96() plot_SBS96_pdf(): plot_DBS144, plot_DBS144_pdf, plot_DBS78, plot_DBS78_pdf, plot_ID166, plot_ID166_pdf, plot_ID476, plot_ID476_pdf, plot_ID476_right, plot_ID476_right_pdf, plot_ID83, plot_ID83_pdf, plot_ID89, plot_ID89_pdf, plot_SBS12, plot_SBS12_pdf, plot_SBS192, plot_SBS192_pdf, plot_SBS288, plot_SBS96, plot_SBS96_pdf
plot_DBS136() plot_DBS136_pdf() plot_SBS1536() plot_SBS1536_pdf(): plot_DBS136, plot_DBS136_pdf, plot_SBS1536, plot_SBS1536_pdf

Indel

Plot small insertion and deletion spectra and signatures: ID83 (COSMIC), ID89 (Koh classification), ID166 (genic/intergenic), and ID476 (flanking base context).

plot_DBS144() plot_DBS144_pdf() plot_DBS78() plot_DBS78_pdf() plot_ID166() plot_ID166_pdf() plot_ID476() plot_ID476_pdf() plot_ID476_right() plot_ID476_right_pdf() plot_ID83() plot_ID83_pdf() plot_ID89() plot_ID89_pdf() plot_SBS12() plot_SBS12_pdf() plot_SBS192() plot_SBS192_pdf() plot_SBS288() plot_SBS96() plot_SBS96_pdf(): plot_DBS144, plot_DBS144_pdf, plot_DBS78, plot_DBS78_pdf, plot_ID166, plot_ID166_pdf, plot_ID476, plot_ID476_pdf, plot_ID476_right, plot_ID476_right_pdf, plot_ID83, plot_ID83_pdf, plot_ID89, plot_ID89_pdf, plot_SBS12, plot_SBS12_pdf, plot_SBS192, plot_SBS192_pdf, plot_SBS288, plot_SBS96, plot_SBS96_pdf

Utilities

Helper functions for working with catalog data.

catalog_row_order(): Return catalog row orders for all supported catalog types