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Normalize a reference-genome argument to a BSgenome object

Source: R/genome_utils.R
normalize_genome_arg.Rd

Accepts either a BSgenome object directly, or one of the string identifiers "GRCh37" / "hg19" / "BSgenome.Hsapiens.1000genomes.hs37d5", "GRCh38" / "hg38" / "BSgenome.Hsapiens.UCSC.hg38", or "GRCm38" / "mm10" / "BSgenome.Mmusculus.UCSC.mm10". The relevant BSgenome package must be installed; an informative error is raised if not.

Usage

normalize_genome_arg(ref_genome)

Arguments

ref_genome

A BSgenome object or a recognized character identifier.

Value

A BSgenome object.