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Collapse a higher-resolution catalog to a lower-resolution one

Source: R/catalog_transform.R
collapse_catalog.Rd

Supports:

  • SBS1536 -> SBS96: collapse pentanucleotide → trinucleotide contexts.

  • SBS192 -> SBS96: sum across the two transcript strands.

  • DBS144 -> DBS78: sum across the two transcript strands.

Usage

collapse_catalog(catalog, to = c("SBS96", "DBS78"))

Arguments

catalog

An mSigSpectra catalog.

to

Target catalog type ("SBS96", "DBS78").

Value

A new catalog with the collapsed rows.